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Mannheimia haemolytica isolates

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Isolates database

Query database

• Search or browse database
• Search by combinations of loci (profiles)

Option settings

• Set general options - including isolate table field handling.
• Set display and query options for locus, schemes or scheme fields.

General information

• Isolates: 47
• Last updated: 2021-07-16
• Defined field values
• Update history
• About BIGSdb

Breakdown

• Unique combinations
• Polymorphic sites
• Scheme and alleles
• Publications
• Sequence bin
• Tag status

Export

• Export dataset
• Contigs
• Sequences - XMFA / concatenated FASTA formats

Analysis

• Codon usage
• Presence/absence status of loci
• Genome comparator
• BLAST
• Species identification

Third party tools

• iTOL - Phylogenetic trees with data overlays
• PhyloViz - Visualization and phylogenetic inference

Miscellaneous

• Description of database fields