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Pasteurella multocida isolates

Missing metadata are labelled N for text and 0 for integers

Updated 1 April 2022

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Sequence bin for M1404

Contig summary statistics

Contigs
24
Total length
2,254,958
Minimum length
1,052
Maximum length
595,546
Mean length
93,957
N50 contig number
3
N50 length (L50)
177,964
N90 contig number
12
N90 length (L90)
55,696
N95 contig number
14
N95 length (L95)
28,122

Contig size distribution

SequenceSequencing methodOriginal designationLengthCommentsLocusStartEndDirectionEMBL formatArtemis
1677 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_1 595546
1699 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_8 458041
1697 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_3 177964
1686 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_12 163740
1678 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_7 114025
1680 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_2 111058
1688 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_4 106896
1695 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_5 85166
1690 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_11 76976
1684 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_6 71654
1689 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_13 61606
1691 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_17 55696
1682 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_20 39235
1694 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_19 28122
1700 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_10 24943
1692 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_14 24465
1679 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_18 16079
1681 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_23 15254
1687 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_9 14550
1685 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_24 7695
1698 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_16 1951
1693 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_22 1784
1696 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_21 1460
1683 Illumina M1404_S39_L001_(paired,_trimmed_pairs)_contig_15 1052