iTOL - Interactive Tree of Life - Isolates

This plugin uploads data for analysis within the Interactive Tree of Life online service:

Interactive tree of life (iTOL): an online tool for the display and annotation of phylogenetic and other trees

iTOL is developed by:

Ivica Letunic (1)
Peer Bork (2,3,4)

Biobyte solutions GmbH, Bothestr 142, 69126 Heidelberg, Germany
European Molecular Biology Laboratory, Meyerhofstrasse 1, 69117 Heidelberg, Germany
Max Delbrück Centre for Molecular Medicine, 13125 Berlin, Germany
Department of Bioinformatics, Biocenter, University of Würzburg, 97074 Würzburg, Germany

Web site: https://itol.embl.de/
Publication: Letunic & Bork (2016) Interactive tree of life (iTOL) v3: an online tool for the display
and annotation of phylogenetic and other trees. Nucleic Acids Res 44(W1):W242-5.

This tool will generate neighbor-joining trees from concatenated nucleotide sequences. Only DNA loci that have a corresponding database containing allele sequence identifiers, or DNA and peptide loci with genome sequences, can be included. Please check the loci that you would like to include. Alternatively select one or more schemes to include all loci that are members of the scheme.

Analysis is limited to 2,000 records or 100,000 sequences (records x loci).

Isolates

User genomes

Optionally include data not in the
database.

Upload assembly FASTA file
(or zip file containing multiple
FASTA files - one per genome):

Loci

Schemes

All loci
- CAP
- LPS_group

iTOL datasets

Select to create data overlays
(Use Ctrl to select multiple)

iTOL data type text labels
coloured strips

Include in identifier isolate name

Action

Pasteurella multocida isolates

Missing metadata are labelled N for text and 0 for integers

Updated 1 April 2022

iTOL - Interactive Tree of Life - Isolates

Interactive tree of life (iTOL): an online tool for the display and annotation of phylogenetic and other trees

1) X73
2) NCTC10322
3) P1059
4) P1702
5) CAPM6431
6) P1234
7) VP161
8) Pm70
9) P1971
10) P3016
11) P2117
12) P903
13) P1573
14) P2723
15) P2441
16) P2093
17) P2095
18) P1662
19) P1591
20) P2687
21) B288
22) B615
23) B522
24) P555
25) M1404
26) B622
27) NCTC10323
28) P934
29) B607
30) P4218
31) B621
32) B859
33) 20N
34) 17BRD_035
35) USMARC-60675
36) EB104
37) PM8-6
38) PM64
39) PM22
40) FDAARGOS_385
41) Razi_Pm0001
42) P1581
43) KVNON-213
44) USMARC-59962
45) USMARC60712
46) NCTC10382
47) A0757
48) HS_Canada1
49) USMARC60248
50) FDAARGOS_644
51) CQ7
52) 161215033201-1
53) P2192
54) HN02
55) 3358
56) DP1
57) F
58) 4407
59) OH1905
60) 3480
61) 39535
62) 36655
63) 32022
64) 35564
65) 34030
66) 36502
67) 28606
68) 41060
69) 31971
70) 40540
71) 38725
72) NCTC11995
73) FDAARGOS_261
74) B2Soron
75) HNA05
76) HNA10
77) S298D
78) HNA07
79) C51_3
80) ATCC51689
81) HS_SKN01
82) 2297PM
85) HND02
86) Clemson
87) 92_2667
88) SH04
89) PMS2
90) PMS14
91) PMUVET4
92) B
95) SKN1
96) GX-Pm
97) UBA9365