Pasteurella multocida isolates

Missing metadata are labelled N for text and 0 for integers

Updated 1 April 2022

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Full information on isolate SKN1 (id:95)

Provenance/meta data

id
95
isolate
SKN1
sender
Henrik Christensen
curator
Henrik Christensen, (E-mail: hech@sund.ku.dk)
update history
5 updates show details
date entered
2021-11-28
datestamp
2022-03-24
year
2017
host
Sheep
lesion
N
country
India
organ
Lung
ST
0

Sequence bin

contigs
107
total length
2,329,255 bp
max length
158,649 bp
mean length
21,769 bp
N50 contig number
16
N50 length (L50)
41,830
N90 contig number
59
N90 length (L90)
10,821
N95 contig number
72
N95 length (L95)
6,586
loci tagged
2
detailed breakdown
Display

Schemes and loci

CAP

capA
50  S 
capB
 
capD
 
capE
 
capF
 
CAP
Not defined

LPS_group

LPSgroup 1
 
LPSgroup 2
 
LPSgroup 3
15  S 
LPSgroup 4
 
LPSgroup 5
 
LPSgroup 6
 
LPSgroup 7
 
LPSgroup 8
 
LPS group
Not defined

Tools

Analysis: