Pasteurella multocida isolates

Missing metadata are labelled N for text and 0 for integers

Updated 1 April 2022

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Full information on isolate PMS14 (id:90)

Provenance/meta data

id
90
isolate
PMS14
sender
Henrik Christensen
curator
Henrik Christensen, (E-mail: hech@sund.ku.dk)
update history
5 updates show details
date entered
2021-11-25
datestamp
2022-03-24
year
2016
host
Sheep
lesion
N
country
India
organ
Lung
ST
288

Sequence bin

contigs
80
total length
2,547,427 bp
max length
268,381 bp
mean length
31,843 bp
N50 contig number
10
N50 length (L50)
72,128
N90 contig number
32
N90 length (L90)
27,542
N95 contig number
38
N95 length (L95)
11,825
loci tagged
1
detailed breakdown
Display

Schemes and loci

CAP

capA
49  S 
capB
 
capD
 
capE
 
capF
 
CAP
Not defined

LPS_group

LPSgroup 1
 
LPSgroup 2
 
LPSgroup 3
 
LPSgroup 4
 
LPSgroup 5
 
LPSgroup 6
15
LPSgroup 7
 
LPSgroup 8
 
LPS group
Not defined

Tools

Analysis: