Pasteurella multocida isolates

Missing metadata are labelled N for text and 0 for integers

Updated 1 April 2022

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Full information on isolate PMS2 (id:89)

Provenance/meta data

id
89
isolate
PMS2
sender
Henrik Christensen
curator
Henrik Christensen, (E-mail: hech@sund.ku.dk)
update history
5 updates show details
date entered
2021-11-25
datestamp
2022-03-24
year
2015
host
Sheep
lesion
N
country
India
organ
Nose
ST
288

Sequence bin

contigs
54
total length
2,352,597 bp
max length
181,992 bp
mean length
43,567 bp
N50 contig number
9
N50 length (L50)
80,987
N90 contig number
29
N90 length (L90)
28,813
N95 contig number
34
N95 length (L95)
19,910
loci tagged
2
detailed breakdown
Display

Schemes and loci

CAP

capA
48  S 
capB
 
capD
 
capE
 
capF
 
CAP
Not defined

LPS_group

LPSgroup 1
 
LPSgroup 2
 
LPSgroup 3
 
LPSgroup 4
 
LPSgroup 5
 
LPSgroup 6
15  S 
LPSgroup 7
 
LPSgroup 8
 
LPS group
Not defined

Tools

Analysis: