Pasteurella multocida isolates

Missing metadata are labelled N for text and 0 for integers

Updated 1 April 2022

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Full information on isolate SH04 (id:88)

Provenance/meta data

id
88
isolate
SH04
sender
Henrik Christensen
curator
Henrik Christensen, (E-mail: hech@sund.ku.dk)
update history
4 updates show details
date entered
2021-11-21
datestamp
2022-03-24
year
2014
host
Pig
lesion
N
country
China
organ
N
ST
0

Sequence bin

contigs
46
total length
2,381,527 bp
max length
403,468 bp
mean length
51,773 bp
N50 contig number
6
N50 length (L50)
134,067
N90 contig number
18
N90 length (L90)
37,392
N95 contig number
22
N95 length (L95)
19,900
loci tagged
1
detailed breakdown
Display

Schemes and loci

CAP

capA
 S  
capB
 
capD
 
capE
 
capF
 
CAP
Not defined

LPS_group

LPSgroup 1
 
LPSgroup 2
 
LPSgroup 3
 
LPSgroup 4
 
LPSgroup 5
 
LPSgroup 6
9
LPSgroup 7
 
LPSgroup 8
 
LPS group
Not defined

Tools

Analysis: